To use this function first obtain a RunInfo Table as described at https://www.ncbi.nlm.nih.gov/Traces/study/?go=help.
download_sra(runtable, path = "sra/", retries = 3, threads = getOption("mc.cores", 1))
| runtable | Path to a runtable as selected in the SRA interface. |
|---|---|
| path | The folder into which to download the FASTQ files. |
| retries | How often to try downloading again after failure. |
| threads | Maximum number of parallel file downloads. |
The list of files with indicated download success.